Research in Computational Molecular Biology

Recomb Retrospectives.- The Second Decade of theInternational Conference on Research in Computational Molecular Biology(RECOMB).- Extended Abstracts.- A MAD-Bayes Algorithm for State-space Inferenceand Clustering with Application to Querying Large Collections of ChIP-Seq DataSets.- Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-PairingCodons in Yeast.- Multitask matrix completion for learning protein interactionsacross diseases.- pathTiMEx: Joint Inference of Mutually Exclusive CancerPathways and their Dependencies in Tumor Progression.- Clonality inference fromsingle tumor samples using low coverage sequence data.- Flexible Modelling ofGenetic Effects on Function-Valued Traits.- MetaFlow: Metagenomic profilingbased on whole-genome coverage analysis with min-cost flows.- LUTE (LocalUnpruned Tuple Expansion): Accurate continuously flexible protein design withgeneral energy functions and rigid-rotamerlike efficiency.- Improving Bloom filterperformance on sequence data using k-mer Bloom filters.-Safe and completecontig assembly via omnitigs.- Long single-molecule reads can resolve thecomplexity of the Influenza virus composed of rare, closely related mutantvariants.-Structural variation detection with read pair information { An improvednull-hypothesis reduces bias.- On Computing Breakpoint Distances for Genomeswith Duplicate Genes.- New Genome Similarity Measures based on Conserved GeneAdjacencies.- Fast Phylogenetic Biodiversity Computations Under a Non-Uniform RandomDistribution.- Short Abstracts.- SLICER: Inferring Branched, Nonlinear CellularTrajectories from Single Cell RNA-seq Data.- Multi-track modeling forgenome-scale reconstruction of 3D chromatin structure from Hi-C data.- Revealingthe Genetic Basis of Immune Traits in the Absence of ExperimentalImmunophenotyping.- Shall we dense? Comparing design strategies for time seriesexpression experiments.- Enabling Privacy-Preserving GWAS in HeterogeneousHuman Populations.- Efficient