Data Integration in the Life Sciences

Keynotes.- An Application Driven Perspective on Biological Data Integration.- Towards a National Healthcare Information Infrastructure.- Data Integration.- Data Access and Integration in the ISPIDER Proteomics Grid.- A Cell-Cycle Knowledge Integration Framework.- Link Discovery in Graphs Derived from Biological Databases.- Text Mining.- Towards an Automated Analysis of Biomedical Abstracts.- Improving Text Mining with Controlled Natural Language: A Case Study for Protein Interactions.- SNP-Converter: An Ontology-Based Solution to Reconcile Heterogeneous SNP Descriptions for Pharmacogenomic Studies.- Systems I.- SABIO-RK: Integration and Curation of Reaction Kinetics Data.- SIBIOS Ontology: A Robust Package for the Integration and Pipelining of Bioinformatics Services.- Data Structures for Genome Annotation, Alternative Splicing, and Validation.- BioFuice: Mapping-Based Data Integration in Bioinformatics.- Potpourri.- A Method for Similarity-Based Grouping of Biological Data.- On Querying OBO Ontologies Using a DAG Pattern Query Language.- Using Term Lists and Inverted Files to Improve Search Speed for Metabolic Pathway Databases.- Systems II.- Arevir: A Secure Platform for Designing Personalized Antiretroviral Therapies Against HIV.- The Distributed Annotation System for Integration of Biological Data.- An Information Management System for Collaboration Within Distributed Working Environment.- Short Papers.- Ontology Analysis on Complexity and Evolution Based on Conceptual Model.- Distributed Execution of Workflows in the INB.- Knowledge Networks of Biological and Medical Data: An Exhaustive and Flexible Solution to Model Life Science Domains.- On Characterising and Identifying Mismatches in Scientific Workflows.- Workflow.- Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data.- Towards a Model of Provenance and User Views in Scientific Workflows.- An Extensible Light-Weight XML-Based Monitoring System for Sequence Databases.